Table 1 |
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Primer List. List of primers used for DNA amplification and ASOH. |
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| Primer name |
Sequence |
Temp °C |
|
|
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| p47 Ex2F |
GCTTCCTCCAGTGGGTAGTGGGATC |
60 |
| p47 161R |
GGAACTCGTAGATCTCGGTGAAGC |
|
| Primer name |
Sequence |
Temp °C |
|
|
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| p40 Ex2F |
GTGCTGAGAGACGAATGTTGG |
60 |
| p40 Ex2R |
GGGCAAGGTTCAGAGGTCAG |
|
| p40 Ex5F |
GACGGGACATCTAGGCTGG |
60 |
| p40 Ex5R |
GGCTCTGGCCATGTGGAAG |
|
| p40 Ex8F |
TCTGAGGCGTGGCTCTGCTG |
60 |
| p40 Ex8R |
GCTCATCTGGGAGCCACTGG |
|
| p40 Ex10F |
ATGACACGGGCTTGTATCAGG |
60 |
| p40 Ex10R |
GAGCTGAAGGTTTTTGCTGGTG |
|
| p40 86T |
TGCTGACATCGAGGAGA |
53 |
| p40 86C |
TGCTGACACCGAGGAGA |
53 |
| p40 353G |
CCTGCTCAGCCTGCCGG |
62 |
| p40 353A |
CCTGCTCAACCTGCCGG |
61 |
| p40 815C |
ACGACCACCGCCCCTCA |
58 |
| p40 815T |
ACGACCACTGCCCCTCA |
56 |
| p40 911C |
GGACGTAGCGCTCATGG |
57 |
| p40 911A |
GGACGTAGAGCTCATGG |
55 |
|
|
||
| Primer name |
Sequence |
Temp °C |
| p67 Ex3F |
CTGGGCACCACAGGGAGCTA |
58 |
| p67 Ex3R |
CACCAAGCCCGCAACACTGA |
|
| p67 Ex6F |
GGGCTTCTATGTGGTTATCTCAA |
60 |
| p67 Ex6R |
CCACAAGGAGGCTACCCTCTTCT |
|
| p67 Ex9F |
GAGCCCAGGCAGGCTCAGTGTCAT |
60 |
| p67 Ex10R |
GCCATCTCAAGGCGGGCTCAAGA |
|
| p67 Ex11F |
GTGTTTCCCCACATCCAC |
60 |
| p67 Ex11R |
AAGGCAGGGAGAGGAACT |
|
| p67 Ex13F |
CAAGGGTTGGGCTAAAGGAC |
60 |
| p67 Ex14R |
GTGTTCTCACACCACAGAGTCAG |
|
| p67 542G |
TGTGGGCAGGCTGTTTC |
55 |
| p67 542A |
TGTGGGCAAGCTGTTTC |
53 |
| p67 836C |
CTGGGCCACGGTCATGT |
57 |
| p67 836T |
CTGGGCCATGGTCATGT |
55 |
| p67 983G |
CCCTGGAAGACCCCAGC |
47 |
| p67 983A |
CCCTGGAAAACCCCAGC |
47 |
| p67 1105G |
CTCAGCCCGGGCTCCCC |
50 |
| p67 1105A |
CTCAGCCCAGGCTCCCC |
50 |
| p67 1167C |
GCTGGAACACACTAAGCTG |
54 |
| p67 1167A |
GCTGGAACAAACTAAGCTG |
54 |
| p67 1183C |
CCAGCTATCGGCCTCGG |
57 |
| p67 1183T |
CCAGCTATTGGCCTCGG |
57 |
|
|
||
| Primer name |
Sequence |
Temp °C |
|
|
||
| p22 Ex 2F |
GACCCTGTCACTGTGCTGTG |
61 |
| p22 Ex 2R |
GAGGCAAACAGCTCACTGTG |
|
| p22 Ex 3F |
CTGAGCTGGGCTGTTCCTT |
63 |
| p22 Ex 3R |
CCACCCAACCCTGTGAGC |
|
| p22 Ex 4F |
CAGCAAAGGAGTCCCGAGT |
60 |
| p22 Ex 4R |
GGAAAAACACTGAGGTAAGT |
|
| p22 Ex 5F |
AAGGCTGAGAACACCCAGG |
60 |
| p22 Ex 5R |
GCTCAGCCTACAGAGCCG |
|
| p22 Ex 6F |
GACCCAGGTCCTGGCTGTG |
60+DMSO |
| p22 Ex 6R |
AGGCTCACGCGCTCCCGG |
|
| p22 85A |
TCGTGGCCACAGCTGGG |
59 |
| p22 85G |
TCGTGGCCGCAGCTGGG |
59 |
| p22 113T |
GTGGTACTTTGGTGCCT |
52 |
| p22 113C |
GTGGTACTCTGGTGCCT |
52 |
| p22 179A |
GAAGAGGAAGAAGGGCT |
51 |
| p22 179C |
GAAGAGGACGAAGGGCT |
53 |
| p22 214C |
GACAGAAGCACATGACC |
53 |
| p22 214T |
GACAGAAGTACATGACC |
51 |
| p22 403G |
CGCCCATCGAGCCCAAG |
59 |
| p22 403A |
CGCCCATCAAGCCCAAG |
56 |
| p22 521C |
GCTGCGGCGGCGGCG |
62 |
| p22 521T |
GCTGCGGTGGCGGCG |
60 |
|
|
||
| Primer name |
Sequence |
Temp °C |
| gp91phox Ex 9F |
CTAAAGCAGAGATCTAAGTGG |
61 |
| gp91phox Ex 9R |
ACGGTGACCACAGAAATAGCTACCT |
|
| gp91phox Ex 11F |
GTTTCTAGGCATTCTGAGCATCAAG |
61 |
| gp91phox Ex 11R |
GTTCGTAAGCCCTGTACACTATG |
|
| gp91phox Ex 12F |
GTGCCTTGGTTAGAATAGCTTGTG |
61 |
| gp91phox Ex 12R |
GTTGAAGATATCTGGAATCTTCTGTTG |
|
| gp91phox 907C |
TGGTCACTCACCCTTTC |
50 |
| gp91phox 907A |
TGGTCACTAACCCTTTC |
48 |
| gp91phox 1414G |
ACAATGCCGGCTTCCTC |
55 |
| gp91phox 1414A |
ACAATGCCAGCTTCCTC |
53 |
| gp91phox 1499A |
GGAGAAAGATGTGATC |
48 |
| gp91phox 1499G |
GGAGAAAGGTGTGATC |
50 |
|
|
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| Primer name |
Sequence |
Temp °C |
|
|
||
| DUOX1 27F |
AGAGAGATCTCCTCTCAAGG |
58 |
| DUOX1 27R |
GGTCACCGGAAGAGCTGAG |
|
| DUOX1 28F |
GGGACCTTGGAAGCTCCAG |
58 |
| DUOX1 28R |
GGACGTCGAGAAGTGAAGAG |
|
| DUOX1 3532T |
GGTCTGAGTTCCCCCAG |
58 |
| DUOX1 3532C |
GGTCTGAGCTCCCCCAG |
60 |
| DUOX1 3647G |
GCCGCCGCCGCAGTTTCC |
66 |
| DUOX1 3647A |
GCCGCCGCCACAGTTTCC |
63 |
|
|
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| Primer name |
Sequence |
Temp °C |
| DUOX2 Ex5F |
ATGTTCTTTCCGACGTGGTGAG |
63 |
| DUOX2 Ex6R |
GCGCCGCCCACATGAGCAG |
|
| DUOX2 Ex17F |
GCCTGCTCAGACTCACAGAG |
62 |
| DUOX2 Ex17R |
ACTCCTTAGGGATCTTGAGCAG |
|
| DUOX2 Ex24F |
GATGCCTGCCAGATCCCCAG |
62 |
| DUOX2 Ex25R |
TGGCCGCCGTGCCTCGTG |
|
| DUOX2 413T |
TGGAGACCTCGTGTTCG |
54 |
| DUOX2 413C |
TGGAGACCCCGTGTTCG |
56 |
| DUOX2 429A |
CCGAACAGCGCGGGGAC |
60 |
| DUOX2 429C |
CCGACCAGCGCGGGGAC |
63 |
| DUOX2 597-8GG |
GCTTCTCGGGGGGACAG |
58 |
| DUOX2 597-8GA |
GCTTCTCGAGGGGACAG |
56 |
| DUOX2 597-8CG |
GCTTCTCCGGGGGACAG |
58 |
| DUOX2 597-8CA |
GCTTCTCCAGGGGACAG |
56 |
| DUOX2 2048G |
TGTGCTCCGTGTGGTCC |
56 |
| DUOX2 2048A |
TGTGCTCCATGTGGTCC |
54 |
| DUOX2 3026G |
CACTCCCCGGCTGTACA |
56 |
| DUOX2 3026A |
CACTCCCCAGCTGTACA |
52 |
| DUOX2 3200T |
CTTTGCCTTGCCACCCT |
53 |
| DUOX2 3200C |
CTTTGCCTCGCCACCCT |
55 |
|
|
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| Primer name |
Sequence |
Temp °C |
|
|
||
| TLR2 450F |
ATTGCAAATCCTGAGAGTGG |
58 |
| TLR2 688R |
GCAGTTCCAAACATTCCACG |
|
| TLR2 1141F |
GCCTGTGAGGATGCCTGG |
60 |
| TLR2 1827R |
GCACAGGACCCCCGTGAG |
|
| TLR2 1782F |
GTGCTGTGCTCTGTTCCTG |
60 |
| TLR2 2392R |
TCCCAACTAGACAAAGACTGG |
|
| TLR2 170T |
GAAAAGATTTTGCTGGAC |
53 |
| TLR2 170Tdel |
GAAAAGATTTGCTGGAC |
53 |
| TLR2 1892C |
GGAAGCCCAGGAAAGCT |
55 |
| TLR2 1892A |
GGAAGCACAGGAAAGCT |
53 |
| TLR2 2258G |
CAAGCTGCGGAAGATAA |
50 |
| TLR2 2258A |
CAAGCTGCAGAAGATAA |
48 |
|
|
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| Primer name |
Sequence |
Temp °C |
| TLR9 Ex2F |
GTGGGTGGAGGTAGAGCTG |
60 |
| TLR9 365R |
ACAGCCAAGAAGGTGCTGG |
|
| TLR9 2501F |
TGCTGCATCACCTCTGTGG |
54 |
| TLR9 2794R |
TGCGGCTGCCATAGACCG |
|
| TLR9 13C |
GTTTCTGCCGCAGCGCC |
60 |
| TLR9 13T |
GTTTCTGCTGCAGCGCC |
58 |
| TLR9 237T |
CACCTCCATGATTCTGA |
52 |
| TLR9 237G |
CACCTCCAGGATTCTGA |
54 |
| TLR9 296C |
GAACTGCCCGCCGGTTG |
58 |
| TLR9 296T |
GAACTGCCTGCCGGTTG |
60 |
| TLR9 2588G |
AAGTGGGCGAGATGAGG |
57 |
| TLR9 2588A |
AAGTGGGCAAGATGAGG |
55 |
| TLR9 2644G |
CGCAGAGCGCAGTGGCA |
60 |
| TLR9 2644A |
CGCAGAGCACAGTGGCA |
58 |
|
|
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| Primer name |
Sequence |
Temp °C |
| AAT Ex2F |
TGTCGGCAAGTACTTGGCACAG |
60 |
| AAT Ex2R |
CATAATGCATTGCCAAGGAGAG |
|
| AAT Ex3F |
CAGATGATGAAGCTGAGCCTCG |
65 |
| AAT Ex3R |
AGCCCTCTGGCCAGTCCTGATG |
|
| AAT Ex5F |
GAGCAAGGCCTATGTGACAGG |
60 |
| AAT Ex5R |
AGCTCAACCCTTCTTTAATGTCAT |
|
| AAT 374G |
ACTCCTCCGTACCCTCA |
56 |
| AAT 374A |
ACTCCTCCATACCCTCA |
54 |
| AAT 863A |
GCACCTGGAAAATGAAC |
50 |
| AAT 863T |
GCACCTGGTAAATGAAC |
50 |
| AAT 1096G |
CCATCGACGAGAAAGGG |
56 |
| AAT 1096A |
CCATCGACAAGAAAGGG |
54 |
|
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Lee et al. Journal of Negative Results in BioMedicine 2006 5:5 doi:10.1186/1477-5751-5-5 |
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